PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023299-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 366aa    MW: 40791.7 Da    PI: 6.358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023299-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12194240455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  WALNUT_00023299-RA 194 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKELQ 240
                         699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-12195243No hitNo description
SMARTSM003536.9E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELSSGKWLS ELEMDDYEYI HQCHMNSTLD DGFPTNDIAT AIQENFQQSF SSESYSSYPA  60
FSTKNTITTT TTTLSNSSIE TSRNVSFERP AKQTKIDSTW NVSGITQNES PKPSSSPHIL  120
SFGNPNSLPD NPKQFCRNLD SSLKPKHEVV TPVNMHVPMI SRGSIENQNH APKASQGNKR  180
AGSVTRSTHS NAQDHIMAER KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYVKELQ  240
ERVNLLEEQT KKRTVESFVS VKKSQLSTDD DTSSCDENFE GRSDEALPEI EARISDKDVL  300
IRIHCEKNRG VVVKILGEIE NLHLSVVNSS VVPFGNSTLD ITVIAQMDNE FDLTAKDLVK  360
TLRVAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047665.11e-140Basic helix-loop-helix DNA-binding superfamily protein, putative
TrEMBLA0A061DHY31e-140A0A061DHY3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGPOPTR_0007s14480.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-68bHLH family protein